R Package Development (on Linux) configure sh: 1: ./configure not found
In R package (on Linux) with configure scripts, using shebang as recommended and making the script configure executable via "chmod u+x configure", configure script ("RPackage/configure") leads to error...
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How can I arrange the labels of the x-axis in an alluvial plot using ggrepel?
I am building an alluvial plot to show if categories of species Red Listining are present or not in legislations. Some groups like "Lampreys" and "Dragonflies and damselflies" are short compared to...
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Using patchwork with geofacet, geom_rect's showing up in unused facets
I'm trying to recreate a stunning and often shared graphic "Where are Americans Born." It involves using facet_geo to display the percent of out-of-state and foreign born residents for each US state...
View Articlegroup_by() is converting dataframe to tibble
I have a problem running st_as_sf() after group_by(). My code isn't working when previously I had no issues.I discovered that group_by() was converting my dataframe to a tibble and st_as_sf() won't...
View ArticleRunning the Breusch-Pagan test manually in R [migrated]
I am trying to run the Breusch-Pagan test manually in RStudio from a weighted linear model (wi = 1/x2). I need help verifying whether the following rationale is correct:What I did:WLS and residuals#...
View ArticleShould I expect better performance from R arrow with partitioned parquet files?
I set up a folder of partitioned parquet files for a project at work, and I'm experiencing severe performance issues. Several hours to do the aggregation.I made this minimal example to show the...
View ArticleIncomplete Expression Error in R with ggplot [closed]
I'm trying to load a plot for my marine bio lab class. I loaded in the data just fine using gsheets, I filtered the data using dplyr for the two fish species I'm plotting, then I go to plot using...
View ArticleAir suggest gihub action errors with no repo found [closed]
I started using air for formatting code and used their ready github action for suggestions taken from here: https://posit-dev.github.io/air/integration-github-actions.html:# Workflow derived from...
View ArticleHow to call a numbered sequence of covariates with paste in a for loop
I have a number of columns that are numbered sequentially. e.g. q1, q2, q3, etc. I also have an indicator variable (ind) for control or treatment status for each observation. I want to conduct a series...
View ArticleHow do I print only n lines of code output in a Quarto document?
This works but I would like something more user friendly. Is there not a chunk option that sets the R code output to be a certain number of lines?---title: "Glimpse Output Example"format:...
View ArticleCompute mean in R dependent on specific value in another variable
I have my dataset called IMS, consisting of 11 variables.I would like to compute the mean for the variable std.y for all observations where the variable pi == 1.Anyone who can tell me how to compute this?
View ArticleWrite multiple tables to Oracle database in a single transaction (via ROracle)
Is it possible to write multiple R dataframes to an Oracle database in a single transaction via ROracle/DBI and dbWriteTable ?dbWriteTable commits the table in full, so transaction management via...
View ArticleCan't find how to create a XML ALTO with tesseract on R
I am struggling with tesseract package (5.3.2 version) for R, trying to have a XML ALTO as output of the ocr() function. I read the documentation which states that this has something to do with the...
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tmap MAP_COLORS not coloring adjacent polygons distinctly
I am trying to use tmap with the MAP_COLOR argument which is supposed to plot the given shapefile with unique colors for adjacent polygons. However, it seems to be failing when I use it on two distinct...
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Insert nested tabset in an R Bookdown document
I found this question R Bookdown: Tabbed headings and the awesome answer from @linog which was the basis for my approach.To show you what's the purpose for my bookdown document, I have done this in r...
View ArticleImplementing image axis labels with ggplot2 + plotly
My goal is to make a bar plot with images as axis labels, like this (screen 1). I also want plotly's chart annotations, but adding plotly to the program causes the axis labels to be interpreted as raw...
View ArticleNested slurm jobs in R using future.batchtools
I am trying to test future.batchtools for parallelisation in R.I have a small test job (run_futurebatchtools_job.R) as:library(future)library(future.batchtools)# Set up the future plan to use SLURM via...
View ArticleDoing PCA with varimax rotation in R
My code has gone south. I'm importing a data 578x17 sheet from csv using the:Data=read.csv("Data.csv", header=TRUE, sep=',', dec='.', row.names= 1 , stringsAsFactors=TRUE)My correlations and covariance...
View ArticleHow to stream LLM responses in a Shiny app instead of waiting for full output?
I am creating a Shiny app in R. One of its features is to display processed text within the app, and then allow the user to click a button to send that text to an LLM (Large Language Model).The tricky...
View ArticleKruskal-Wallis test with details on pairwise comparisons
The standard stats::kruskal.test module allows to calculate the kruskal-wallis test on a dataset:>>> data(diamonds)>>> kruskal.test(price~carat, data=diamonds)Kruskal-Wallis rank sum...
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How to replicate a distribution plot [closed]
I need to make some small edits on a plot which should look like something as follows I do have the input data with the proper format (showing only the first seven lines for each...
View ArticleRead excel file cannot find the path?
library("readxl")my_data <- read_excel("GVA.xlsx")my_datahowever the console says the path does not exist. How can I import excel/csv files and know that the file will always be found.Why does this...
View ArticleTransform genotypic matrix to GAPIT-friendly format to conduct GWAS [closed]
I have a genotypic matrix obtained thorugh a 25K analysis with calls in IUPAC format (e.g. locus1 = AA, TT, TT, CG, ... for each genotype). I would like to convert it to numerical format for GWAS...
View ArticleHow can I get these custom contrasts in modelbased? [closed]
I'd like to use the modelbased package for custom contrasts.How can I contrast (i) time by Site and also (ii) reference vs other sites at specific time points, but include them together in the same...
View ArticleDefine and use a probabilistic distribution within a shiny flexdashboard app...
I'm trying to use the fitdistrplus package in a shiny flexdashboard app, defining a Pearson-3 distribution function. To do this, I define the function with the ppearsonIII() function from the PearsonDS...
View ArticleCombine linetype legend but keep separate color legends and arrange...
I'm trying to graph coefficients (points) and standard errors (error bars) for different metrics and different double machine learning algorithms, across 3 different examples (3 different plots). I've...
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How to change the legend symbol for line types?
I have a plot I'm happy with, but in the legend the lines distinguishing line types appear blue, unlike anything on the plot. I want to change the color of the lines in the legend, preferably just to...
View ArticleMaking an R module linking OpenBLAS statically
I am trying to build an R module linking statically OpenBLAS:mypkg/├── DESCRIPTION├── NAMESPACE├── R/│├── check_openblas.R│├── my_interface.R│└── openblas_init.R├── inst/│└── libs/│├── linux/││└──...
View ArticleSearch / replace in R with a capture group
In a Quarto book, I mention R functions as back-quoted strings in text like this, always ending in ()test <- "The functions `lm()` and `car::vif()` are good test cases"I would like to replace each...
View ArticleLooking for advice on how to work with json files that sort data in atypical...
I'm working with a json file in R that seems to have a somewhat odd format for a class assignment in both R and Python:{"data":[{"British Columbia":"BC","BC":"4.63"}, {"Alberta":"AB","AB":"4.15"},...
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