I have created a multi-panel plot using plot_model(). However, the scale limits on the y_axis came different for each panel.
I first run a model fm then plot the predicted values:
p <- plot_model(
fm,
type = c("pred"),
terms = c("Trial","CS [-0.9,0,0.9]", "Prof[-10.9,0,10.9]", "Congr"))
Then I wanted to get same y-axis scale (limits) on all panels:
p + ggplot2::scale_y_continuous(limits = c(5.9, 6.2))
but this didn't work!
Any help is appreciated!
Thanks! That seems to work but only if I minimize the panels, that is having each panel on a separate plot:
When I want to show both panels in the same plot and with the Y-limits desired, nothing changes.
Is this because the size of the plot is limited?
Here is a reproducible example:
df <- structure(list(Subject = c(1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,
1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,
1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,
2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,
2L, 2L, 2L, 2L, 2L), Log_RT = c(5.955837369, 6.228511004, 5.874930731,
5.84932478, 5.780743516, 5.866468057, 5.424950017, 5.81711116,
5.899897354, 5.834810737, 5.683579767, 5.655991811, 5.624017506,
5.459585514, 5.697093487, 5.934894196, 5.802118375, 5.834810737,
5.789960171, 5.631211782, 5.796057751, 5.669880923, 5.549076085,
5.81711116, 6.03068526, 6.040254711, 5.81711116, 5.80814249,
5.863631176, 5.641907071, 6.033086222, 6.021023349, 6.470799504,
6.380122537, 6.424869024, 6.29156914, 6.061456919, 6.502790046,
6.282266747, 6.311734809, 6.455198563, 6.259581464, 6.570882962,
6.371611847, 6.570882962, 6.483107351, 6.333279628, 6.455198563,
6.469250317, 6.289715571, 6.285998095, 6.442540166, 6.289715571,
6.395261598, 6.152732695, 6.415096959, 6.352629396, 6.270988432,
6.210600077, 6.311734809, 6.059123196, 6.208590026), CSC = c(-0.562217385,
-0.562217385, -0.562217385, -0.562217385, -0.562217385, -0.562217385,
-0.562217385, -0.562217385, -0.562217385, -0.562217385, -0.562217385,
-0.562217385, -0.562217385, -0.562217385, -0.562217385, -0.562217385,
-0.562217385, -0.562217385, -0.562217385, -0.562217385, -0.562217385,
-0.562217385, -0.562217385, -0.562217385, -0.562217385, -0.562217385,
-0.562217385, -0.562217385, -0.562217385, -0.562217385, -0.145550719,
-0.145550719, -0.145550719, -0.145550719, -0.145550719, -0.145550719,
-0.145550719, -0.145550719, -0.145550719, -0.145550719, -0.145550719,
-0.145550719, -0.145550719, -0.145550719, -0.145550719, -0.145550719,
-0.145550719, -0.145550719, -0.145550719, -0.145550719, -0.145550719,
-0.145550719, -0.145550719, -0.145550719, -0.145550719, -0.145550719,
-0.145550719, -0.145550719, -0.145550719, -0.145550719, -0.145550719,
-0.145550719), Trial = c(-14.60970149, -13.60970149, -12.60970149,
-11.60970149, -10.60970149, -9.609701493, -8.609701493, -7.609701493,
-6.609701493, -5.609701493, -4.609701493, -3.609701493, -2.609701493,
-1.609701493, -0.609701493, 0.390298507, 1.390298507, 2.390298507,
3.390298507, 4.390298507, 6.390298507, 7.390298507, 8.390298507,
9.390298507, 10.39029851, 11.39029851, 12.39029851, 13.39029851,
14.39029851, 15.39029851, -15.60970149, -14.60970149, -13.60970149,
-12.60970149, -11.60970149, -10.60970149, -9.609701493, -8.609701493,
-7.609701493, -6.609701493, -5.609701493, -4.609701493, -3.609701493,
-2.609701493, -1.609701493, -0.609701493, 0.390298507, 1.390298507,
2.390298507, 3.390298507, 4.390298507, 5.390298507, 6.390298507,
7.390298507, 8.390298507, 9.390298507, 10.39029851, 11.39029851,
12.39029851, 13.39029851, 14.39029851, 15.39029851), Congr.d = c(1L,
0L, 1L, 1L, 1L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L,
1L, 0L, 0L, 1L, 1L, 1L, 1L, 0L, 1L, 1L, 0L, 1L, 0L, 1L, 0L, 0L,
1L, 0L, 1L, 1L, 0L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 1L, 0L, 0L, 1L,
1L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 0L, 0L, 1L), ProC = c(7.814814815,
7.814814815, 7.814814815, 7.814814815, 7.814814815, 7.814814815,
7.814814815, 7.814814815, 7.814814815, 7.814814815, 7.814814815,
7.814814815, 7.814814815, 7.814814815, 7.814814815, 7.814814815,
7.814814815, 7.814814815, 7.814814815, 7.814814815, 7.814814815,
7.814814815, 7.814814815, 7.814814815, 7.814814815, 7.814814815,
7.814814815, 7.814814815, 7.814814815, 7.814814815, 12.25925926,
12.25925926, 12.25925926, 12.25925926, 12.25925926, 12.25925926,
12.25925926, 12.25925926, 12.25925926, 12.25925926, 12.25925926,
12.25925926, 12.25925926, 12.25925926, 12.25925926, 12.25925926,
12.25925926, 12.25925926, 12.25925926, 12.25925926, 12.25925926,
12.25925926, 12.25925926, 12.25925926, 12.25925926, 12.25925926,
12.25925926, 12.25925926, 12.25925926, 12.25925926, 12.25925926,
12.25925926)), class = "data.frame", row.names = c(NA, -62L))
For the plot:
library(jtools)
library(sjPlot)
library(pbkrtest)
fm <- lmer(Log_RT ~ Congr.d*CSC*Trial*ProC +
(1+Congr.d||Subject), data=df)
summ(fm)
plot_model(fm, type = c("pred"),terms = c("Trial","CSC [-0.2,0,0.2]",
"ProC[-2.2,0,2.2]", "Congr.d[0,1]"),axis.lim=c(6.2,6.8))
You can see that the Y-axis limits is not as indicated in the code.