R issue when moving an rmd file from one project to another (working...
I have two projects in R. I've moved an .Rmd document from project 1 to project 2. When I used the .Rmd file which I had moved to project 2 to try and read in some data I get the following error...
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Use stat_summary to label median line on boxplot
I have a function wherein I'm trying to use stat_summary() to plot the value of the median just above the median line on a geom_boxplot(). I've reduced my problem and created a toy example to simplify...
View Articlefind the string present and update the frequency
I have 2 dataframes, I am trying to find if the words from df dataframe is present in dataframe sentence's texts then I need to mutate source values as columns and print frequency for each source...
View ArticleI'm having trouble with sending a form using POST to retrieve data in R
I'm having trouble collecting doctors from https://www.uchealth.org/providers/. I've found out it's a POST method but with httr I can't seem to create the form. Here's what I haveurl = url =...
View Articleadd plotting symbol in CCA plot in R
I want to generate canonical correspondence analysis(CCA) plot, to show the influence of environmental parameters on species distribution using this code:spe <- read.csv("spe.csv", row.names=1,...
View ArticleR Aggregate days and count specific observations for each day
Day Time Numbers 6388 2017-02-01 10:43 R33 7129 2017-02-04 15:32 N39.0, N39.0, N39.0 9689 2017-02-17 08:54 S72.11, S72.11, S72.11, S72.11 6703 2017-02-02 18:55 R11 9026 2017-02-13 17:34 S06.0, S06.0,...
View Articlesubsetting yearmon objects
I have monthly data library(zoo); library(data.table) dat <- data.table(month=as.yearmon(paste0(“2019-0“,1:9), “%Y-%m“)) and I would like to subset it to months after, say, May 2019....
View ArticleWhy is matrix product slower when matrix has very small values?
I create two matrices A and B of the same dimension. A contains larger values than B. The matrix multiplication A %*% A is about 10 times faster than B %*% B. Why is this?## disable openMP...
View ArticleLoop ARIMA combination to minimize RMSE
Goal : I want to create a loop in R that takes every combination of an ARIMA model on my insample data to get the smallest RMSE when I compare it with the out-of-sample data. What I haveThis is what I...
View ArticleUnable to plot varibles from dataframe in R
plot_dist = function(df1,df2,features,nrows,ncols){ fig_list = list() j=1 for (feature in features){ print(feature) fig=ggplot()+ geom_density(data=df1,aes(feature),color="blue")+...
View ArticleContinue block command
I try to run this code:library (stackr) df <- data.frame(id = c(1144035, 58936751)) for (j in 1:2) { tryCatch({ reputation_history <- stack_users(df$id[j], "reputation-history") }, error =...
View Articler - Error: `data` and `reference` should be factors with the same levels
I've trained an artificial neural network algorithm with caret and nnet using r. I am trying to generate a meaningful output - using Confusion Matrix, ideally - but continue to get errors such as "data...
View ArticleMS/Metabolomics R packages with VAST scaling
I am looking for MassSpec/Metabolomic R analysis packages that includes VAST scaling. I'd really appreciate any pointers.
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Why do my ROC plots and AUC value look good, when my confusion matrix from...
I'm using the the package randomForest in R to create a model to classify cases into disease (1) or disease free (0):classify_BV_100t <- randomForest(bv.disease~., data=RF_input_BV_clean, ntree =...
View ArticleDelete string pattern in R while keeping the rest of the string
I know this has been asked previously, but I'm unable to find an case that is comparable to the situation in my data. Here's a sample of my data:> head(dataraw) success 2 day pre during time...
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How to plot geom_line over bar chart grouped by x variable not fill variable?
I have a data frame df Group Time_Period mean uci lci 1 A Before 4.712195 5.054539 4.369852 2 A After 5.881463 6.241784 5.521142 3 B Before 5.349754 5.872940 4.826567 4 B After 6.653595 7.246231...
View ArticleHow to make a proportion from a dataset
Basically, my dataset is about the total mysteries that occurred from 2000-2015. There is a column that is literally titled Mystery.Solved and in that column, each one is either "Yes" for yes it has...
View ArticleFinding the longest consecutive streak in a tibble column
I have the following tibble:my_tbl <- tribble( ~year, ~event_id, ~winner_id, 2011, "A", 4322, 2011, "A", 9604, 2012, "A", 4322, 2012, "A", 9604, 2012, "A", 1663, 2013, "A", 4322, 2014, "A", 5478,...
View ArticleIs it possible to remove horizontal borders from xtable?
I have a bit of code from a shinyapp that determines what will be exported to a pdf document: special_ortho_table <- reactive({ if(input$ortho == "yes"){ sp_ortho_table <- drugsUI %>%...
View ArticleR: Rolling mean on values above variable quantile threshold
I have a large data.table. I require:the rolling quantile of a numeric columnthe rolling mean of the numeric column applied on values above the (moving) quantile thresholdlibrary(data.table)...
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